Assess Dataset Annotation Coverage — assess_annotation

Checks what proportion of derived variables have derivation text documented. Returns one evidence row per dataset summarising annotation coverage, with indicator_id = "U-003".

Usage

assess_annotation_coverage(metadata, ctx, config = NULL)

Arguments

metadata: A data frame with columns dataset, variable, origin, and derivation.
ctx: A run context created by r4subcore::r4sub_run_context().
config: A configuration list from usability_config_default(). If NULL the default configuration is used.

Value

A validated evidence tibble (see r4subcore::as_evidence()).

Examples

ctx <- suppressMessages(r4subcore::r4sub_run_context(study_id = "STUDY01"))
ev  <- suppressMessages(
  assess_annotation_coverage(r4subdata::oncology_metadata, ctx)
)
ev[, c("asset_id", "result", "metric_value")]
#>   asset_id result metric_value
#> 1     ADSL   fail          0.5
#> 2     ADRS   pass          1.0
#> 3    ADTTE   pass          1.0